Wraithbait

Summary: Sometimes Rodney McKay finds himself in situations that make him doubt his own genius.

Summary: Evil!Sheppard in a parallel universe. Poor Dr. McKay with a family to feed.

Dr. Rodney McKay must balance his family life with his passionate and yet cold commander at Stargate Command, Colonel John Sheppard.

Het McKay/Brown and McKay/Carter. Non-consensual Sheppard/McKay, Lorne/Chuck, and mention of non-consensual Kowalski/Other male, Jackson/Other female, and O'Neill/Carter.

Summary: Rodney's captor likes him just a little too much.

Summary: Choosing to stay in Pegasus wasn't complicated for the people of Atlantis. What happened next? That was where things got interesting.

Summary: Rodney learns a lesson.

Summary: Rodney pimps himself out to get a ZPM. John is unimpressed and confused by his own reaction.

Summary: Sheppard/OMC Connor Davids is a shy, quiet scientist who keeps to himself but over time finds he's lonely. John Sheppard is the man everyone wants and everyone wants to be except all he wants is quiet understanding. Can he get that from the new Dr. Davids? Can they both overcome gender to be with each other?

This story is now complete.

Summary: Rodney doesn't know how to do this alone anymore.

Summary: The fall of Atlantis came and went with a bang...Now McKay finds himself back at the beginning again. But there is a problem or two.

Summary: Sentinels and Guides form a juvenile pair bond in childhood in order for Sentinels to survive. Neither John or Rodney formed that bond until they were older, which shocked both their parents, the academic community, and their governments.

Summary: Recovering after a mission goes wrong, John sleeps. And dreams of Rodney.

Summary: McShep 1st time/kiss post Shrine. After having a talk with Keller, Rodney has a few words for John.

Summary: Imagine, if you will, Rodney McKay naked.

Summary: He flexed his fingers, hoping to ease the stinging in his palm. Fucking Sheppard threw too hard. He'd been lucky, with the way the ball smacked into his glove, to tag Fernandez out at all. Plus, he was positive he'd pulled a groin muscle! Yeah, that was permanent ligament damage; he could tell.

Summary: John shook his head. "There's just not a lot of people who like my husband," John answered. "He's... different." / Teyla gave him a soft smile. "Different does not always mean wrong." / "Yeah, you know, there are people who might disagree with you on that." / "Are you one of them?" / John thought for a moment. "No – I guess I'm not."

Summary: Jeannie once told him he was no catch.

Summary: Rodney's a disgraced para-archaeologist-physicist; John's a famous movie star with secrets; they live on a planet called Harmony.

Summary: Something goes wrong during the evacuation of Atlantis, stranding members of the Atlantis expedition and SG1 on a very strange world. (Rodney McKay/John Sheppard throughout; later includes Radek Zelenka/Daniel Jackson, Elizabeth Weir/Stephen Caldwell, Teyla Emmagan/Ronon Dex, Carson Beckett/Major Lorne, Sam Carter/Teal'c, Dr. Kavanagh/Lindsey Novak, and Cameron Mitchell/Carolyn Lam)

Summary: Carson assigns John a Marine and gives him strict instructions not to set foot outside his quarters.

Summary: When John suddenly loses Rodney he finds it an unacceptable loss, but later someone appears who changes everything.
Deathfic but only kind of.